Habitat

The objective of this research was to examine bottlenose dolphin (Tursiops truncatus) habitat use in the Indian River Lagoon (IRL) based on monthly relocation of photo-identified individuals, prey availability and environmental factors from 2003-2015. We focused on the variation of spatial and temporal abiotic and biotic factors and their influence on bottlenose dolphin habitat use patterns. Harbor Branch Oceanographic Institute (HBOI) conducted monthly photo-identification surveys along the length of the IRL and GPS locations of photographed dolphins were collected at the time of surveying. Stratified random samples of prey and environmental variables were collected monthly by the Florida Fish and Wildlife Conservation Commission (FWC) as part of the Fisheries-Independent Monitoring (FIM) program. Kernel density estimation was used to determine the magnitude-per-unit area of dolphins across a continuous raster surface of the IRL by wet and dry seasons each year, the values of which were used as a response variable in Classification and regression tree (CART) analyses with FIM fish community and environmental factors as predictors. Understanding how dolphins respond to environmental factors over time in the IRL could be used to predict future responses in estuaries and prioritize conservation and restoration actions.

Variation in the seasonal water level fluctuations of tropical and subtropical wetlands controls the production and concentration of aquatic fauna that support breeding wading birds. However, little is known about how particular components of the annual hydrologic cycle affect processes that control food availability and reproduction. This thesis identifies specific mechanisms responsible for transforming wet season prey standing stock into dry season prey concentrations, links landscape hydrological patterns to wading bird nesting, and presents a predictive model of Wood Stork nesting. I examined the supoort for several a priori hypotheses of factors affecting wading bird prey concentrations and wading bird nest effort. Factors affecting the concentration and vulnerability of prey were important for transferring secondary production to higher trophic levels. Receding water levels, microtopographic variation, and high standing stocks of prey were critical for generating pulses of food availabiltiy to meet the high energy requirements of breeding predatory birds.

I examined summer home range use of Altantic spotted dolphins in the Bahamas from 1991-2004. Home ranges for 86 dolphins using the 95% Fixed Kernel Density (FKD) estimator averages 62.o km2+=22.96 km2 and ranged from 24.8 km2 to 148.4 km2. Older animals and males had the largest ranges. Home range size did not vary with female reproductive status. core areas were defined by the 50% FKD contour and averaged 10.32 km2 +=5.47 km2. Habitat use was different between reproductive states for females. Non-reproductively active (NRA) females used deeped habitat. Behavioral use of the home range varied spatially. The core area was an important foraging area for males and reproductively active females. NRA females foraged more outside their core area compared to the core area.

The largemouth bass (Micropterus salmoides) fishery was at an all time low on Lake Okeechobee when experimental supplemental stockings were done to try and enhance local bass populations. Largemouth bass had never been stocked on a large lake like Lake Okeechobee. The objectives were to develop a methodology, study dispersal, and compare stocked versus wild bass habitat choices. The methodology underwent considerable changes between studies. Bass dispersed to the edges by the second sampling period, so a larger sampling area may be needed. Water depth and pH were found to be significantly different between wild and stocked bass. Hatchery bass are naèive about predators, which may have resulted in stocked bass not moving to shallower areas like wild bass. The pH was weakly correlated with depth, so differences may be partially due to the fact that as depth increases, pH may also increase.

The presence of heavy metals and other pollutants is detrimental to marine ecosystems. The queen conch, once an important fisheries species in the Florida Keys, has not sufficiently recovered after a 25-year fishery closure. Research has shown high levels of copper and zinc in the gonads and digestive glands of adult conch found in the nearshore waters. Four sites relevant to queen conch larval recruitment were tested in 2010 for the presence of copper and zinc in the water, phytoplankton, sediment, and seagrass epiphytes over seven months. Both metals were detected in all sample types and no seasonal or geographical differences were detected. Surface water concentrations from the field were used to conduct acute and chronic toxicity tests on various ages of queen conch larvae and their phytoplankton food source. When zinc concentrations (0-40 (So(Bg/L) similar to those measured in situ were used, there was no significant impact on conch larval survival although some velar lobe de velopment was impaired. However, field concentrations of copper (0-15 (So(Bg/L), which often surpassed water quality standards, negatively impacted growth, survival, and development of the larvae. Chronic exposure to copper, through the water and food, disrupted the metamorphic success of competent larvae and decreased post-metamorphosis survival. Exposure to copper at later life stages increased mortality, suggesting that heavy metals have a negative effect on larval recruitment in localized areas of the Florida Keys. Structural equation modeling revealed that copper and zinc are moving through the systems differently and are best represented by two different models.

Two sympatric dolphin species, Stenella frontalis and Tursiops truncatus, resident to Little Bahama Bank, Bahamas were found to mostly forage independent of one another, but occasionally foraged in mixed groups. Analysis of over 20 years of data revealed the degree of overlap to be minimal with spatially distinct regions identified for both species, environmental segregation based on depth, bottom type, temperature, and time of day. Results based on observational data indicated significant differences in group size and selected prey. For S. frontalis, lactating females had the most distinct diet, which differed from that of non-reproductively active (NRA) females. Pregnant females had ambiguous prey use results, but diet differences were revealed through nutritional analysis. Lactating females had a higher intake of all nutrients (% moisture, % lipid, % protein, and calories) than pregnant females but lower than NRA females. Mother and calf pairs selected prey for caloric and moisture values. The influence of calves on foraging groups was reflected through discrete differences in all nutrients. Males and females appeared to select the same major prey, but female prey use was much more diverse.

Hypoxia and sulfide exposure, increased using glucose, are considered major environmental stressors in seagrass communities. Quantum efficiency, total soluble protein and catalase activity were quantified to evaluate the applicability of each of these bioindicators to detect environmental stress in three tropical seagrass species, Thalassia testudinum (Banks ex Kèoenig), Halodule wrightii (Ascherson) and Syringodium filiforme (Kuetz). Hypoxia + sulfide treatments significantly decreased the quantum efficiency of all three species, but showed no response in protein and catalase activity. Although no treatment effect was found, catalase activity was enhanced in T. testudinum leaves and H. wrightii roots relative to other tissues, while S. filiforme showed no location-specific catalase activity. These results indicate that quantum efficiency is a more sensitive indicator than protein and catalase activity to hypoxia and sulfide stress in seagrasses.

Successful foraging by avian predators is influenced largely by prey availability. In a large-scale experiment at the Loxahatchee Impoundment Landscape Assessment project within the Arthur R. Marshall Loxahatchee National Wildlife Refuge, I manipulated two components of prey availability, water depth and vegetation density (submerged aquatic vegetation and emergent vegetation), and quantified the response by wading birds in terms of foraging habitat selection and foraging success. Manly's standardized selection index showed that birds preferred shallow water and intermediate vegetation densities. However, the treatments had little effect on either individual capture rate or efficiency. This was a consistent pattern seen across multiple experiments. Birds selected for certain habitat features but accrued little benefit in terms of foraging success. I hypothesize that birds selected sites with shallow water and intermediate vegetation densities because they anticipated higher prey densities, but they did not experience it here because I controlled for prey density.

The subgenus Rexmela, located primarily in Florida, is newly evolved, dating back 1.6 million years, first occurring in the Ayer's Landing Member of the Caloosahatchee Formation. This subgenus has highly variably shell morphology and has led to the erection of several species and subspecies. In order to provide a quantitative methodology with which to differentiate between populations, samples of Recent and fossil populations were collected and measured for a variety of parameters. The parameters measured included length, width, spire height, and several angles, and allowed for a discriminate analysis to be completed. The analysis supported the distinction of several of the populations as ecophenotypes. Paleoenvironments of the fossil populations were then recreated using analogues of Recent populations.

The study examined the past and present spatial distribution of the Florida tree snail, L. fasciatus solidus, in the Long Pine Key area of the Everglades National Park. Remote sensing and mobile GIS were used to create a GIS database of the field research results. Collection and survey-based data were used to create a current spatial distribution map of L. fasciatus solidus throughout the Long Pine Key area. The data collected during the 2006 survey were compared to a 1931 survey of the same study area conducted by Dr. William Clench of the Museum of Comparative Zoology (MCZ) of Harvard University. The data was used to determine the success of L. fasciatus solidus from 1931 to 2006, to evaluate a correlation between hammock size and the number of color forms, and to detect migration patterns of L. fasciatus solidus within the Long Pine Key area of Everglades National Park. Based on the average success rate for the seven color forms and the hammocks, the L. fasciatus solidus population in the Long Pine Key area exemplifies one of a stable community. Each color form used for the analysis had a success rate between 67% and 100%. These percentages can only be the worst case scenario based on the fact that many Liguus were not observed, and any others that would have been observed, would only increase the success rate.